New Tutorial Posted
January 6, 2021
Happy New Year! The long overdue TPP tutorial has been posted. The tutorial visuals show the upcoming TPP 6.0 release - available as release candidates for those willing to work ahead of its official release. The updates to PeptideProphet in TPP 6.0 include optimizations for Kojak and a more streamlined interface for both the pipeline and viewing the results. PeptideProphet is the recommended tool for validating cross-linked peptide spectrum matches from Kojak at this time, with additional recommendations with other tools forthcoming. The tutorial can be found in the Documentation->Instructions.
Also, I think I’m way overdue for updating the release candidates. Internally, I’m several versions ahead of the website. I hope to rectify this lag soon.